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rabbit polyclonal anti-homer1 160–003  (Synaptic Systems)


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    Structured Review

    Synaptic Systems rabbit polyclonal anti-homer1 160–003

    Rabbit Polyclonal Anti Homer1 160–003, supplied by Synaptic Systems, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rabbit+polyclonal+anti-homer1/homer1+antibody/pmc11896613-26-2-6
    Average 90 stars, based on 1 article reviews
    rabbit polyclonal anti-homer1 160–003 - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Translatome analysis reveals cellular network in DLK-dependent hippocampal glutamatergic neuron degeneration"

    Article Title: Translatome analysis reveals cellular network in DLK-dependent hippocampal glutamatergic neuron degeneration

    Journal: eLife

    doi: 10.7554/eLife.101173


    Figure Legend Snippet:

    Techniques Used: Knock-Out, Over Expression, Sequencing, RNAscope, TUNEL Assay, SYBR Green Assay, Bicinchoninic Acid Protein Assay, Multiplex Assay, Software

    Related Articles

    Recombinant:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Atomic Absorption Spectroscopy:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Saline:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Electron Microscopy:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Mutagenesis:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Software:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Imaging:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Microscopy:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Labeling:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Over Expression:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Infection:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Immunolabeling:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Staining:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    In Vitro:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Transfection:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Fluorescence:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    In Vivo:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Injection:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Western Blot:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Cell Culture:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Incubation:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Negative Control:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Transmission Assay:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Patch Clamp:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Expressing:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Concentration Assay:

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The dilution ratio of primary antibodies was as follows: rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:300), guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:500), and chicken polyclonal anti-MAP2 (Abcam, 1:1000).

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: After sections were washed with PBS (10 min × 2) and blocking solution (20 min × 1), DyLight405 anti-guinea pig (Jackson ImmunoResearch Laboratories), Alexa Fluor 488 anti-chicken (Jackson ImmunoResearch Laboratories), and Alexa Fluor 594 anti-rabbit (Jackson ImmunoResearch Laboratories) were added to samples at a dilution of 1:800 for secondary antibody incubation at room temperature for 1 h. The immunostained slides were mounted with ProLong Gold antifade reagent (Life Technologies) and cured for 24 h. Fluorescent images of immunostained sections were acquired at 5×, 40×, and 63× magnifications with a Zeiss LSM 880 confocal microscope.

    Article Title: The synaptic basis of activity-dependent eye-specific competition.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Donkey anti-Guinea pig IgG unconjugated (1:100) Jackson ImmunoResearch Cat#706-005-148; RRID: AB_2340443 Donkey anti-Mouse IgG unconjugated (1:100) Jackson ImmunoResearch Cat#715-005-150; RRID: AB_2340758 Donkey anti-Rabbit IgG unconjugated (1:100) Jackson ImmunoResearch Cat#711-005-152; RRID: AB_2340585 Guinea pig polyclonal anit-VGluT2 (1:100) Millipore Sigma AB2251-I; RRID: AB_2665454 Mouse monoclonal anti-Bassoon (1:100) Abcam Ab82958; RRID: AB_1860018 Rabbit polyclonal anti-Homer1 (1:100) Synaptic Systems Cat#160 003; RRID: AB_887730 Chemicals, peptides, and recombinant proteins Alexa Fluor 405 NHS-ester Thermo Fisher Scientific Cat#A30000 Alexa Fluor 647 NHS-ester Thermo Fisher Scientific Cat#A20006 Atto 488 NHS-ester ATTO-TEC GmbH AD 488–31 Catalase from bovine liver Sigma-Aldrich C1345 Chloroform Sigma-Aldrich Cat#288306 Cy-3B Mono NHS-ester Cytiva PA63101 Cysteamine Sigma-Aldrich Cat#30070 DY-749P1 NHS-ester Dyomics GmnH Cat#749P1-01 Dulbecco’s Phosphate Buffered Saline Sigma-Aldrich D8662 Ethanol Pharmco Cat#111000200C1GL FluoSpheres Infrared (715/755) Invitrogen Cat#F8799 FluoSpheres Orange (540/560) Invitrogen Cat#F8809 D-(+)-Glucose Sigma Aldrich Cat#G7528 Glucose Oxidase Sigma-Aldrich G2133 Glutaraldehyde 70%, EM grade Electron Microscopy Sciences Cat#16360 Normal Donkey Serum Jackson ImmunoResearch Cat#017-000-121 Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710 Sodium azide Sigma-Aldrich S2002 Sodium chloride Sigma-Aldrich S9888 Sodium hydroxide pellets Sigma-Aldrich Cat#567530 Tris-base (Trizma-base) Sigma-Aldrich T8524 Triton X-100 Sigma-Aldrich Cat#11332481001 Critical commercial assays UltraBed Kit Electron Microscopy Sciences Cat#14310 Experimental models: Organisms/strains Mouse: C57BL/6J Age: 2–8 days; Sex: M/F The Jackson Laboratory Cat#000664 Mouse: b2-nAChR / Age: 2–8 days; Sex: M/F Burbridge et al.104 N/A Oligonucleotides Primer: nAChR forward: CAGGCGTT ATCCACAAAGACAGA Burbridge et al.104 N/A Primer: nAChR reverse: TTGAGGGG AGCAGAACAGAATC Burbridge et al.104 N/A Primer: nAChR mutant reverse: ACTTGGGTTTGGGCGTGTTGAG Burbridge et al.104 N/A (Continued on next page) 14 Cell Reports 42, 112085, February 28, 2023


    Article Title: Presynaptic activity and protein turnover are correlated at the single-synapse level.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit polyclonal anti-Homer1 Synaptic Systems Cat#: 160 003; RRID: AB_887730 Rabbit polyclonal anti-PSD95 Cell Signaling Cat#: 3450S; RRID: AB_2292883 Guinea pig polyclonal anti-synaptophysin Synaptic Systems Cat#: 101 004; RRID: AB_1210382 Mouse monoclonal anti-synaptotagmin1 (clone 604.2) conjugated to Atto 647N Synaptic Systems Cat#: 105 311 AT1; RRID: AB_10547969 Donkey anti-guinea pig conjugated to Alexa 488 Dianova Cat#: 706-545-148; RRID: AB_2340472 Donkey anti-rabbit conjugated to Cy3 Dianova Cat#: 711-165-152; RRID: AB_2307443 Goat anti-guinea pig conjugated to STAR580 Abberior Cat#: ST580-1006-500UG Goat anti-rabbit conjugated to STAR635P Abberior Cat#: 2-0012-007-2 Chemicals, peptides, and recombinant proteins Bicuculline Sigma-Aldrich Cat#: 14340 Tetrodotoxin Tocris Cat#: 1078 Colchicine Sigma-Aldrich Cat#: C9754 LR White medium grade Agar Scientific Cat#: AGR1281 Accelerator for LR White resin Agar Scientific Cat#: AGR1283 15N-leucine Sigma-Aldrich Cat#: 340960 Software and algorithms MATLAB R2017b The Mathworks, Inc. https://www.mathworks.com/products/matlab/ SigmaPlot 10.0 Systat Software Inc. https://www.sigmaplot.com/products/sigmaplot/ ImageJ National Institutes of Health https://imagej.nih.gov/ij Adobe Photoshop, Creative Suite 6 Adobe https://www.adobe.com/products/photoshop.html Huygens Essential 4.4 Scientific Volume Imaging https://svi.nl/Huygens-Essential Other Abberior STED microscope Aberrior Instruments N/A Nikon Ti-E, epifluorescence microscope Nikon Corporation N/A NanoSIMS 50L Cameca N/A EM UC6, ultramicrotome Leica Microsystems N/A

    Article Title: Characterization of Brain Dysfunction Induced by Bacterial Lipopeptides That Alter Neuronal Activity and Network in Rodent Brains
    Article Snippet: The blocked membranes from both in vivo and in vitro experiments were probed with following primary antibodies: guinea pig polyclonal anti-VGluT1 (Synaptic Systems, 1:1000) and rabbit polyclonal anti-Homer1 (Synaptic Systems, 1:3000), and mouse monoclonal anti- β-actin (Sigma-Aldrich, 1:5000).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal antiBassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).

    Article Title: Auxiliary α2δ1 and α2δ3 Subunits of Calcium Channels Drive Excitatory and Inhibitory Neuronal Network Development
    Article Snippet: The following primary antibodies were used: rat anti-HA 1:1000 (Roche, catalog #11867423001, clone 3F10), mouse anti-HA at 1:1000 (Covance, catalog #MMS-101P, clone 16B12), guinea pig polyclonal anti-Bassoon at 1:1000 (Synaptic Systems, catalog #141004), rabbit polyclonal anti-Homer1 at 1:1000 (Synaptic Systems, catalog #160003), rabbit anti-gephyrin at 1:1000 (Synaptic Systems, catalog #147111), and secondary antibodies fluorescently labeled with Alexa-488, Alexa-568, Cy3, Alexa-647, or Cy5 (Jackson ImmunoResearch Laboratories, Thermo Fischer Scientific).



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    Rabbit Anti Homer1 Polyclonal 160003, supplied by Synaptic Systems, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Journal: eLife

    Article Title: Translatome analysis reveals cellular network in DLK-dependent hippocampal glutamatergic neuron degeneration

    doi: 10.7554/eLife.101173

    Figure Lengend Snippet:

    Article Snippet: Antibody , Rabbit polyclonal anti-Homer1 , Synaptic systems , 160–003; RRID: AB_887730 , IF (1:500) tissue.

    Techniques: Knock-Out, Over Expression, Sequencing, RNAscope, TUNEL Assay, SYBR Green Assay, Bicinchoninic Acid Protein Assay, Multiplex Assay, Software

    Journal: eLife

    Article Title: Downregulation of Dickkopf-3, a Wnt antagonist elevated in Alzheimer’s disease, restores synapse integrity and memory in a disease mouse model

    doi: 10.7554/eLife.89453

    Figure Lengend Snippet:

    Article Snippet: Antibody , Rabbit polyclonal anti-Homer1 , Synaptic Systems , Cat# 160 003, RRID: AB_887730 , 1:1,000 for IF.

    Techniques: Isolation, Knock-Out, Control, Sequencing, shRNA, Recombinant, TUNEL Assay, cDNA Synthesis, Fluorsave, Software, Microscopy, Immunofluorescence, Patch Clamp